STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCJAP00000072538Uncharacterized protein. (471 aa)    
Predicted Functional Partners:
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.923
BLACAT1
Bladder cancer associated transcript 1.
   
 0.844
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.708
SRSF2
Serine and arginine rich splicing factor 2.
   
 0.706
SRSF8
Serine and arginine rich splicing factor 8.
   
 0.706
SRSF7
Serine/arginine-rich splicing factor 7 isoform 1.
   
 0.676
SNRNP48
U11/U12 small nuclear ribonucleoprotein 48 kDa protein.
   
 
 0.657
RNPC3
RNA-binding protein 40.
   
 
 0.653
F7ISW2_CALJA
Uncharacterized protein.
   
 0.608
SRSF1
Uncharacterized protein.
   
 0.608
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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