STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH8AlkB homolog 8, tRNA methyltransferase. (664 aa)    
Predicted Functional Partners:
BUD23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
  
 0.905
FTO
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.759
TRMT112
tRNA methyltransferase subunit 11-2.
   
 
 0.755
CWF19L2
CWF19 like cell cycle control factor 2.
 
      0.650
ALKBH7
AlkB homolog 7.
      
 0.630
ALKBH1
Alkylated DNA repair protein alkB homolog 1.
      
 0.618
ALKBH2
Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 isoform 1.
      
 0.568
BAALC
BAALC binder of MAP3K1 and KLF4.
      
 0.561
CTU1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position; Belongs to the TtcA family. CTU1/NCS6/ATPBD3 subfamily.
      
 0.528
JMJD4
Jumonji domain containing 4.
   
  
 0.525
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.