STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMO1LIM domain only 1. (160 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.923
LDB2
LIM domain-binding protein 2 isoform a.
    
 0.905
TAL1
BHLH domain-containing protein.
    
 0.812
TCF3
Transcription factor 3.
    
 0.644
GATA1
GATA binding protein 1.
    
 0.625
TAL2
T-cell acute lymphocytic leukemia protein 2.
    
 0.595
LYL1
LYL1 basic helix-loop-helix family member.
    
 0.593
GATA2
Endothelial transcription factor GATA-2 isoform 1.
    
 0.581
CBFB
Core-binding factor subunit beta isoform 1.
    
 0.572
GATA3
GATA binding protein 3.
    
 0.560
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.