STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIFOPrimary cilia formation. (243 aa)    
Predicted Functional Partners:
DENND2D
DENN domain containing 2D.
      
 0.840
DYNLRB2
Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.
   
  
 0.662
RSPH1
Radial spoke head component 1.
   
  
 0.635
CAPS
Calcyphosin isoform a.
   
  
 0.635
CFAP53
Cilia and flagella associated protein 53.
      
 0.620
CHI3L2
Chitinase 3 like 2; Belongs to the glycosyl hydrolase 18 family.
      
 0.611
CATSPERD
Cation channel sperm associated auxiliary subunit delta.
      
 0.611
CEP89
Centrosomal protein 89.
      
 0.581
ROPN1L
Rhophilin associated tail protein 1 like.
      
 0.581
TPPP3
Tubulin polymerization-promoting protein family member 3.
   
  
 0.581
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.