STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCELSciellin. (719 aa)    
Predicted Functional Partners:
C1orf116
Chromosome 1 open reading frame 116.
   
  
 0.614
EHF
ETS homologous factor.
      
 0.613
MGAT5B
Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B isoform 3.
   
 0.594
HMCN1
Hemicentin 1.
    
 
 0.574
INKA1
Inka box actin regulator 1.
      
 0.570
MEIS3
Meis homeobox 3.
      
 0.567
DTX3L
Deltex E3 ubiquitin ligase 3L.
   
 
 0.558
FRAS1
Fraser extracellular matrix complex subunit 1.
   
 
 0.537
LAMB3
Laminin subunit beta 3.
   
  
 0.537
LOC100408493
Uncharacterized protein.
      
 0.514
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.