PSMB11 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PSMB11

Proteasome subunit beta. (231 aa)

Predicted Functional Partners:

PSMB4

0.975

PSMB10

0.971

PSMB9

0.971

PSMB2

0.971

PSMB3

0.969

PSMA5

0.967

PSMA1

0.962

PSMA6

0.961

PSMA4

0.961

UBXN7

0.959

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PSMA1	PSMA4	ENSCJAP00000078351	ENSCJAP00000074589	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA1	PSMA5	ENSCJAP00000078351	ENSCJAP00000051065	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA1	PSMA6	ENSCJAP00000078351	ENSCJAP00000053530	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA1	PSMB10	ENSCJAP00000078351	ENSCJAP00000029359	Proteasome subunit alpha type.	Proteasome subunit beta.	0.998
PSMA1	PSMB11	ENSCJAP00000078351	ENSCJAP00000074722	Proteasome subunit alpha type.	Proteasome subunit beta.	0.962
PSMA1	PSMB2	ENSCJAP00000078351	ENSCJAP00000060324	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA1	PSMB3	ENSCJAP00000078351	ENSCJAP00000061330	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA1	PSMB4	ENSCJAP00000078351	ENSCJAP00000014051	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
PSMA1	PSMB9	ENSCJAP00000078351	ENSCJAP00000040131	Proteasome subunit alpha type.	Proteasome subunit beta.	0.998
PSMA1	UBXN7	ENSCJAP00000078351	ENSCJAP00000033534	Proteasome subunit alpha type.	UBX domain-containing protein 7.	0.966
PSMA4	PSMA1	ENSCJAP00000074589	ENSCJAP00000078351	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA4	PSMA5	ENSCJAP00000074589	ENSCJAP00000051065	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA4	PSMA6	ENSCJAP00000074589	ENSCJAP00000053530	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA4	PSMB10	ENSCJAP00000074589	ENSCJAP00000029359	Proteasome subunit alpha type.	Proteasome subunit beta.	0.987
PSMA4	PSMB11	ENSCJAP00000074589	ENSCJAP00000074722	Proteasome subunit alpha type.	Proteasome subunit beta.	0.961
PSMA4	PSMB2	ENSCJAP00000074589	ENSCJAP00000060324	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA4	PSMB3	ENSCJAP00000074589	ENSCJAP00000061330	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA4	PSMB4	ENSCJAP00000074589	ENSCJAP00000014051	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
PSMA4	PSMB9	ENSCJAP00000074589	ENSCJAP00000040131	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA4	UBXN7	ENSCJAP00000074589	ENSCJAP00000033534	Proteasome subunit alpha type.	UBX domain-containing protein 7.	0.959