FAM187A protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FAM187A

Family with sequence similarity 187 member A. (414 aa)

Predicted Functional Partners:

HIGD1B

0.564

UBE2K

0.505

TRIP12

0.503

LGR5

0.417

RXFP1

0.417

LGR4

0.417

RXFP2

0.417

UBXN7

0.401

UBA52

0.401

ENSCJAP00000052511

0.401

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000052511	FAM187A	ENSCJAP00000052511	ENSCJAP00000075294	Ubiquitin-like domain-containing protein.	Family with sequence similarity 187 member A.	0.401
ENSCJAP00000052511	TRIP12	ENSCJAP00000052511	ENSCJAP00000024288	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.648
ENSCJAP00000052511	UBA52	ENSCJAP00000052511	ENSCJAP00000048706	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.901
ENSCJAP00000052511	UBE2K	ENSCJAP00000052511	ENSCJAP00000056680	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.791
ENSCJAP00000052511	UBXN7	ENSCJAP00000052511	ENSCJAP00000033534	Ubiquitin-like domain-containing protein.	UBX domain-containing protein 7.	0.927
FAM187A	ENSCJAP00000052511	ENSCJAP00000075294	ENSCJAP00000052511	Family with sequence similarity 187 member A.	Ubiquitin-like domain-containing protein.	0.401
FAM187A	HIGD1B	ENSCJAP00000075294	ENSCJAP00000067285	Family with sequence similarity 187 member A.	HIG1 hypoxia inducible domain family member 1B.	0.564
FAM187A	LGR4	ENSCJAP00000075294	ENSCJAP00000011465	Family with sequence similarity 187 member A.	Leucine-rich repeat-containing G-protein coupled receptor 4.	0.417
FAM187A	LGR5	ENSCJAP00000075294	ENSCJAP00000002599	Family with sequence similarity 187 member A.	Leucine-rich repeat-containing G-protein coupled receptor 5.	0.417
FAM187A	RXFP1	ENSCJAP00000075294	ENSCJAP00000002739	Family with sequence similarity 187 member A.	Relaxin family peptide receptor 1.	0.417
FAM187A	RXFP2	ENSCJAP00000075294	ENSCJAP00000034424	Family with sequence similarity 187 member A.	Relaxin family peptide receptor 2.	0.417
FAM187A	TRIP12	ENSCJAP00000075294	ENSCJAP00000024288	Family with sequence similarity 187 member A.	Uncharacterized protein.	0.503
FAM187A	UBA52	ENSCJAP00000075294	ENSCJAP00000048706	Family with sequence similarity 187 member A.	Ubiquitin-like domain-containing protein.	0.401
FAM187A	UBE2K	ENSCJAP00000075294	ENSCJAP00000056680	Family with sequence similarity 187 member A.	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.505
FAM187A	UBXN7	ENSCJAP00000075294	ENSCJAP00000033534	Family with sequence similarity 187 member A.	UBX domain-containing protein 7.	0.401
HIGD1B	FAM187A	ENSCJAP00000067285	ENSCJAP00000075294	HIG1 hypoxia inducible domain family member 1B.	Family with sequence similarity 187 member A.	0.564
LGR4	FAM187A	ENSCJAP00000011465	ENSCJAP00000075294	Leucine-rich repeat-containing G-protein coupled receptor 4.	Family with sequence similarity 187 member A.	0.417
LGR4	LGR5	ENSCJAP00000011465	ENSCJAP00000002599	Leucine-rich repeat-containing G-protein coupled receptor 4.	Leucine-rich repeat-containing G-protein coupled receptor 5.	0.970
LGR5	FAM187A	ENSCJAP00000002599	ENSCJAP00000075294	Leucine-rich repeat-containing G-protein coupled receptor 5.	Family with sequence similarity 187 member A.	0.417
LGR5	LGR4	ENSCJAP00000002599	ENSCJAP00000011465	Leucine-rich repeat-containing G-protein coupled receptor 5.	Leucine-rich repeat-containing G-protein coupled receptor 4.	0.970