STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLN5Uncharacterized protein. (207 aa)    
Predicted Functional Partners:
CLN6
CLN6 transmembrane ER protein.
  
   
 0.965
CLN8
CLN8 transmembrane ER and ERGIC protein.
  
   
 0.957
CLN3
Battenin.
    
 
 0.934
MFSD8
Major facilitator superfamily domain containing 8.
      
 0.864
TPP1
Tripeptidyl peptidase 1.
      
 0.805
PPT1
Palmitoyl-protein thioesterase 1.
      
 0.766
CTSH
Uncharacterized protein; Belongs to the peptidase C1 family.
      
 0.710
CRISP1
Cysteine rich secretory protein 1; Belongs to the CRISP family.
      
 0.700
CTSF
Cathepsin F; Belongs to the peptidase C1 family.
      
 0.678
ARSG
Arylsulfatase G.
   
 
 0.660
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.