STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCJAP00000075982Matrin-type domain-containing protein. (97 aa)    
Predicted Functional Partners:
U2SURP
U2 snRNP associated SURP domain containing.
   
    0.747
NIPBL
Nipped-B protein.
   
 0.739
SENP6
SUMO specific peptidase 6.
   
 
 0.672
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
   0.582
ZFC3H1
Zinc finger C3H1-type containing.
   
   0.563
BCLAF1
Uncharacterized protein.
   
 0.546
ARID4B
AT-rich interaction domain 4B.
   
 0.542
YTHDC1
YTH domain containing 1.
   
 
 0.518
ARID4A
AT-rich interactive domain-containing protein 4A isoform I.
   
 0.516
REPIN1
Replication initiator 1 isoform 3.
    
 0.509
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.