STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBBP6Uncharacterized protein. (1831 aa)    
Predicted Functional Partners:
WDR33
Pre-mRNA 3' end processing protein WDR33 isoform 1.
   
 
 0.987
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
    
 
 0.986
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 
 0.986
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.984
UBE3D
Ubiquitin protein ligase E3D.
    
 0.979
SYMPK
Symplekin.
    
 
 0.976
FIP1L1
Pre-mRNA 3'-end-processing factor FIP1 isoform 1.
    
 
 0.974
WDR82
WD repeat-containing protein 82.
    
 
 0.969
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 
 0.927
TRIP12
Uncharacterized protein.
   
 
  0.923
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.