STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL16A1Collagen type XVI alpha 1 chain. (1611 aa)    
Predicted Functional Partners:
COL6A2
Uncharacterized protein.
   
 0.853
LAMA3
Laminin subunit alpha 3.
   
 0.698
FBN1
Fibrillin 1.
   
 0.667
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.648
LAMC1
Laminin subunit gamma-1.
   
 0.616
COL5A1
Collagen alpha-1(V) chain preproprotein.
  
0.609
COL5A2
Collagen alpha-2(V) chain preproprotein.
  
0.608
FKBP10
Peptidylprolyl isomerase.
   
 
 0.594
COL1A1
Collagen alpha-1(I) chain preproprotein.
  
0.592
LAMB3
Laminin subunit beta 3.
   
 0.587
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.