STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100398964Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
HNRNPK
Heterogeneous nuclear ribonucleoprotein K isoform a.
   
 0.718
TRA2B
Transformer-2 protein homolog beta isoform 1.
  
 0.686
HNRNPA2B1
Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.
  
0.684
ALYREF
Aly/REF export factor.
  
 0.659
SRSF8
Serine and arginine rich splicing factor 8.
  
 0.654
SRSF2
Serine and arginine rich splicing factor 2.
  
 0.635
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.629
HNRNPC
Heterogeneous nuclear ribonucleoproteins C1/C2 isoform a.
   
 0.627
HNRNPL
Uncharacterized protein.
   
 0.619
SRSF1
Uncharacterized protein.
  
 0.615
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.