STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RASGEF1BRasGEF domain family member 1B. (611 aa)    
Predicted Functional Partners:
ZC3H4
Zinc finger CCCH-type containing 4.
      
 0.701
UNC5D
Netrin receptor UNC5D.
      
 0.651
ZC3H12A
Zinc finger CCCH-type containing 12A.
   
  
 0.622
CUX2
Homeobox protein cut-like.
   
  
 0.600
DLL1
Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.
      
 0.592
HAUS8
HAUS augmin like complex subunit 8.
      
 0.572
ATP9B
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.565
PRKG2
cGMP-dependent protein kinase.
 
    
 0.563
HES6
Hes family bHLH transcription factor 6.
      
 0.558
SLC26A3
Chloride anion exchanger; Chloride/bicarbonate exchanger. Belongs to the SLC26A/SulP transporter (TC 2.A.53) family.
      
 0.505
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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