SBDS protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SBDS

Ribosome maturation protein SBDS. (250 aa)

Predicted Functional Partners:

EFL1

0.908

CLN3

0.796

EEF2

0.712

MRTO4

0.710

RPL11

0.701

ENSCJAP00000072852

0.701

F7ID25_CALJA

0.682

RPL37A

0.682

ENSCJAP00000070587

0.682

ENSCJAP00000077014

0.682

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLN3	SBDS	ENSCJAP00000058510	ENSCJAP00000077033	Battenin.	Ribosome maturation protein SBDS.	0.796
EEF2	ENSCJAP00000070587	ENSCJAP00000045718	ENSCJAP00000070587	Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]	Uncharacterized protein.	0.838
EEF2	ENSCJAP00000072852	ENSCJAP00000045718	ENSCJAP00000072852	Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.949
EEF2	ENSCJAP00000077014	ENSCJAP00000045718	ENSCJAP00000077014	Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]	Uncharacterized protein.	0.838
EEF2	F7ID25_CALJA	ENSCJAP00000045718	ENSCJAP00000022738	Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]	Uncharacterized protein.	0.838
EEF2	MRTO4	ENSCJAP00000045718	ENSCJAP00000012627	Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.806
EEF2	RPL11	ENSCJAP00000045718	ENSCJAP00000038979	Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]	60S ribosomal protein L11 isoform 1; Belongs to the universal ribosomal protein uL5 family.	0.949
EEF2	RPL37A	ENSCJAP00000045718	ENSCJAP00000064682	Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]	Uncharacterized protein.	0.838
EEF2	SBDS	ENSCJAP00000045718	ENSCJAP00000077033	Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]	Ribosome maturation protein SBDS.	0.712
EFL1	ENSCJAP00000070587	ENSCJAP00000058842	ENSCJAP00000070587	Elongation factor like GTPase 1.	Uncharacterized protein.	0.632
EFL1	ENSCJAP00000072852	ENSCJAP00000058842	ENSCJAP00000072852	Elongation factor like GTPase 1.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.870
EFL1	ENSCJAP00000077014	ENSCJAP00000058842	ENSCJAP00000077014	Elongation factor like GTPase 1.	Uncharacterized protein.	0.632
EFL1	F7ID25_CALJA	ENSCJAP00000058842	ENSCJAP00000022738	Elongation factor like GTPase 1.	Uncharacterized protein.	0.632
EFL1	MRTO4	ENSCJAP00000058842	ENSCJAP00000012627	Elongation factor like GTPase 1.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.857
EFL1	RPL11	ENSCJAP00000058842	ENSCJAP00000038979	Elongation factor like GTPase 1.	60S ribosomal protein L11 isoform 1; Belongs to the universal ribosomal protein uL5 family.	0.870
EFL1	RPL37A	ENSCJAP00000058842	ENSCJAP00000064682	Elongation factor like GTPase 1.	Uncharacterized protein.	0.632
EFL1	SBDS	ENSCJAP00000058842	ENSCJAP00000077033	Elongation factor like GTPase 1.	Ribosome maturation protein SBDS.	0.908
ENSCJAP00000070587	EEF2	ENSCJAP00000070587	ENSCJAP00000045718	Uncharacterized protein.	Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]	0.838
ENSCJAP00000070587	EFL1	ENSCJAP00000070587	ENSCJAP00000058842	Uncharacterized protein.	Elongation factor like GTPase 1.	0.632
ENSCJAP00000070587	ENSCJAP00000072852	ENSCJAP00000070587	ENSCJAP00000072852	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.868