STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX28DEAD-box helicase 28. (546 aa)    
Predicted Functional Partners:
UTP3
UTP3 small subunit processome component.
   
 0.963
NGDN
Neuroguidin isoform 1.
   
 0.942
MRM3
Mitochondrial rRNA methyltransferase 3.
   
 
 0.907
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.898
WDR46
WD repeat domain 46.
   
 0.887
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.884
DDX52
DExD-box helicase 52.
  
0.872
PDCD11
Programmed cell death 11.
   
 0.869
MALSU1
Mitochondrial assembly of ribosomal large subunit protein 1.
   
 
 0.856
NOP14
NOP14 nucleolar protein.
   
 0.854
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.