STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCJAP00000078089Uncharacterized protein. (137 aa)    
Predicted Functional Partners:
EPRS1
Uncharacterized protein.
  
 
 0.973
THUMPD1
THUMP domain containing 1.
   
 
 0.560
PUS3
Pseudouridine synthase 3.
  
 
 0.536
NSUN5
NOP2/Sun RNA methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.525
DUS1L
tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like.
   
  
 0.506
ENSCJAP00000059384
Uncharacterized protein.
   
  
 0.506
BUD23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
    0.489
UTP3
UTP3 small subunit processome component.
   
    0.489
ENSCJAP00000057767
Brix domain-containing protein.
   
    0.489
BRIX1
Brix domain-containing protein.
   
    0.489
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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