STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VCUG_00929PolyA_pol domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (697 aa)    
Predicted Functional Partners:
VCUG_01134
VacB and RNase II family 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.
  
 0.849
VCUG_01312
Tyrosine--tRNA ligase.
  
 
 0.800
VCUG_02325
Exonuclease domain-containing protein.
    
 0.788
VCUG_02053
BPL/LPL catalytic domain-containing protein.
  
  
 0.708
VCUG_00264
Lactamase_B domain-containing protein.
  
  
 0.667
VCUG_01977
Uncharacterized protein.
  
  
 0.633
VCUG_01190
Cysteine-tRNA ligase.
  
  
 0.632
VCUG_01089
Proline-tRNA ligase.
  
  
 0.621
VCUG_00446
Glutamine-fructose-6-phosphate transaminase (Isomerizing).
    
 0.621
VCUG_01998
tRNA pseudouridine synthase B.
  
  
 0.615
Your Current Organism:
Vavraia culicis
NCBI taxonomy Id: 948595
Other names: V. culicis subsp. floridensis, Vavraia culicis subsp. floridensis
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