STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO76187.1Uncharacterized protein YjcR. (254 aa)    
Predicted Functional Partners:
SDO76223.1
Phage terminase large subunit.
 
     0.912
SDO76258.1
Phage portal protein, SPP1 family.
 
     0.695
SDO76294.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.690
SDO76156.1
Site-specific DNA recombinase.
       0.636
SDO87965.1
Phage minor structural protein GP20.
 
     0.566
SDO76328.1
Hypothetical protein.
       0.504
SDP10183.1
LPXTG-motif cell wall anchor domain-containing protein/conserved repeat domain-containing protein.
  
     0.445
SDP80328.1
Protein of unknown function.
  
     0.405
Your Current Organism:
Clostridium gasigenes
NCBI taxonomy Id: 94869
Other names: ATCC BAA-158, C. gasigenes, CIP 106517, Clostridium gasigenes Broda et al. 2000, DSM 12272, strain DB1A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.