STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO66716.1Putative ABC transport system ATP-binding protein. (255 aa)    
Predicted Functional Partners:
SDO66746.1
Putative ABC transport system permease protein.
 
 0.989
SDP14609.1
Putative ABC transport system permease protein.
 
 0.957
SDO71127.1
Putative ABC transport system permease protein.
 
  0.899
SDO66682.1
Signal transduction histidine kinase.
 
   
 0.862
SDP12619.1
FtsX-like permease family protein.
 
 0.845
SDP11607.1
Putative ABC transport system permease protein.
 
  0.792
SDP48373.1
ABC-type multidrug transport system, ATPase and permease component.
 
     
0.786
SDO66647.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.773
SDP14545.1
Signal transduction histidine kinase.
 
   
 0.773
SDO71071.1
Signal transduction histidine kinase.
 
   
 0.770
Your Current Organism:
Clostridium gasigenes
NCBI taxonomy Id: 94869
Other names: ATCC BAA-158, C. gasigenes, CIP 106517, Clostridium gasigenes Broda et al. 2000, DSM 12272, strain DB1A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.