SDP16113.1 protein (Clostridium gasigenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDP16113.1

Two-component system, CitB family, sensor histidine kinase DctS. (535 aa)

Predicted Functional Partners:

SDP16097.1

0.970

SDO80475.1

0.932

SDP82539.1

0.932

SDP16070.1

0.821

SDO63620.1

0.579

SDO74223.1

0.575

SDO66421.1

0.573

SDO69927.1

0.565

SDO73830.1

0.544

SDO94165.1

0.519

Your Current Organism:

Clostridium gasigenes

NCBI taxonomy Id: 94869
Other names: ATCC BAA-158, C. gasigenes, CIP 106517, Clostridium gasigenes Broda et al. 2000, DSM 12272, strain DB1A

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDO63620.1	SDO73830.1	SAMN04488529_1017	SAMN04488529_101270	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.998
SDO63620.1	SDO94165.1	SAMN04488529_1017	SAMN04488529_101889	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Two component transcriptional regulator, LytTR family.	0.460
SDO63620.1	SDP16113.1	SAMN04488529_1017	SAMN04488529_102342	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Two-component system, CitB family, sensor histidine kinase DctS.	0.579
SDO66421.1	SDO69927.1	SAMN04488529_10171	SAMN04488529_101152	Accessory gene regulator B.	Accessory gene regulator B.	0.886
SDO66421.1	SDO74223.1	SAMN04488529_10171	SAMN04488529_101285	Accessory gene regulator B.	Accessory gene regulator B.	0.932
SDO66421.1	SDP16113.1	SAMN04488529_10171	SAMN04488529_102342	Accessory gene regulator B.	Two-component system, CitB family, sensor histidine kinase DctS.	0.573
SDO69927.1	SDO66421.1	SAMN04488529_101152	SAMN04488529_10171	Accessory gene regulator B.	Accessory gene regulator B.	0.886
SDO69927.1	SDO74223.1	SAMN04488529_101152	SAMN04488529_101285	Accessory gene regulator B.	Accessory gene regulator B.	0.917
SDO69927.1	SDP16113.1	SAMN04488529_101152	SAMN04488529_102342	Accessory gene regulator B.	Two-component system, CitB family, sensor histidine kinase DctS.	0.565
SDO73830.1	SDO63620.1	SAMN04488529_101270	SAMN04488529_1017	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.998
SDO73830.1	SDO80475.1	SAMN04488529_101270	SAMN04488529_101479	Diguanylate cyclase (GGDEF) domain-containing protein.	Two-component system, CitB family, response regulator.	0.779
SDO73830.1	SDP16097.1	SAMN04488529_101270	SAMN04488529_102341	Diguanylate cyclase (GGDEF) domain-containing protein.	Two-component system, CitB family, response regulator DctR.	0.779
SDO73830.1	SDP16113.1	SAMN04488529_101270	SAMN04488529_102342	Diguanylate cyclase (GGDEF) domain-containing protein.	Two-component system, CitB family, sensor histidine kinase DctS.	0.544
SDO73830.1	SDP82539.1	SAMN04488529_101270	SAMN04488529_12038	Diguanylate cyclase (GGDEF) domain-containing protein.	Two-component system, CitB family, response regulator.	0.779
SDO74223.1	SDO66421.1	SAMN04488529_101285	SAMN04488529_10171	Accessory gene regulator B.	Accessory gene regulator B.	0.932
SDO74223.1	SDO69927.1	SAMN04488529_101285	SAMN04488529_101152	Accessory gene regulator B.	Accessory gene regulator B.	0.917
SDO74223.1	SDP16113.1	SAMN04488529_101285	SAMN04488529_102342	Accessory gene regulator B.	Two-component system, CitB family, sensor histidine kinase DctS.	0.575
SDO80475.1	SDO73830.1	SAMN04488529_101479	SAMN04488529_101270	Two-component system, CitB family, response regulator.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.779
SDO80475.1	SDP16070.1	SAMN04488529_101479	SAMN04488529_102340	Two-component system, CitB family, response regulator.	Citrate carrier protein, CCS family.	0.669
SDO80475.1	SDP16113.1	SAMN04488529_101479	SAMN04488529_102342	Two-component system, CitB family, response regulator.	Two-component system, CitB family, sensor histidine kinase DctS.	0.932