STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP36683.1Putative aminopeptidase FrvX. (345 aa)    
Predicted Functional Partners:
SDP36708.1
ABC-2 type transport system ATP-binding protein.
       0.503
SDP36726.1
ABC-2 type transport system permease protein.
       0.503
SDP48116.1
Protein of unknown function.
  
     0.494
metN
D-methionine transport system ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.492
SDP66638.1
Hypothetical protein.
  
     0.432
SDP36651.1
D-methionine transport system substrate-binding protein; Belongs to the nlpA lipoprotein family.
       0.430
SDP11870.1
6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
   
 
 0.413
SDP10301.1
Aryl-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
     
 0.402
SDP11759.1
Aryl-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
     
 0.402
Your Current Organism:
Clostridium gasigenes
NCBI taxonomy Id: 94869
Other names: ATCC BAA-158, C. gasigenes, CIP 106517, Clostridium gasigenes Broda et al. 2000, DSM 12272, strain DB1A
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