STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP40553.1Uncharacterized protein YaaQ. (109 aa)    
Predicted Functional Partners:
SDP40608.1
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development).
  
    0.829
SDP40581.1
DNA polymerase-3 subunit delta'.
  
    0.821
SDP40632.1
Copper chaperone CopZ.
  
    0.783
SDP40537.1
dTMP kinase.
  
    0.714
SDP40651.1
4Fe-4S dicluster domain-containing protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.622
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
   
    0.582
SDP70344.1
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
   
    0.582
SDP73790.1
c-di-AMP phosphodiesterase, consists of a GGDEF-like and DHH domains; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
  
 0.581
SDP40486.1
Metal-dependent amidase/aminoacylase/carboxypeptidase; Belongs to the peptidase M20A family.
       0.572
SDP40511.1
Inhibitor of sigma-G Gin.
       0.564
Your Current Organism:
Clostridium gasigenes
NCBI taxonomy Id: 94869
Other names: ATCC BAA-158, C. gasigenes, CIP 106517, Clostridium gasigenes Broda et al. 2000, DSM 12272, strain DB1A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.