SDP43756.1 protein (Clostridium gasigenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDP43756.1

HD domain-containing protein. (362 aa)

Predicted Functional Partners:

SDP53598.1

0.932

SDO63620.1

0.881

SDP68599.1

0.815

SDP68530.1

0.789

SDO73830.1

0.786

SDP60548.1

0.772

SDP36306.1

0.754

SDP72769.1

0.748

SDO80571.1

0.727

SDP18059.1

0.726

Your Current Organism:

Clostridium gasigenes

NCBI taxonomy Id: 94869
Other names: ATCC BAA-158, C. gasigenes, CIP 106517, Clostridium gasigenes Broda et al. 2000, DSM 12272, strain DB1A

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDO63620.1	SDO73830.1	SAMN04488529_1017	SAMN04488529_101270	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.998
SDO63620.1	SDO80571.1	SAMN04488529_1017	SAMN04488529_101483	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.853
SDO63620.1	SDP18059.1	SAMN04488529_1017	SAMN04488529_102414	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.906
SDO63620.1	SDP36306.1	SAMN04488529_1017	SAMN04488529_104148	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.987
SDO63620.1	SDP43756.1	SAMN04488529_1017	SAMN04488529_105165	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	HD domain-containing protein.	0.881
SDO63620.1	SDP53598.1	SAMN04488529_1017	SAMN04488529_10750	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.983
SDO63620.1	SDP68530.1	SAMN04488529_1017	SAMN04488529_11233	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.989
SDO63620.1	SDP68599.1	SAMN04488529_1017	SAMN04488529_11237	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.990
SDO63620.1	SDP72769.1	SAMN04488529_1017	SAMN04488529_11411	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.852
SDO73830.1	SDO63620.1	SAMN04488529_101270	SAMN04488529_1017	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.998
SDO73830.1	SDO80571.1	SAMN04488529_101270	SAMN04488529_101483	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.972
SDO73830.1	SDP18059.1	SAMN04488529_101270	SAMN04488529_102414	Diguanylate cyclase (GGDEF) domain-containing protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.901
SDO73830.1	SDP36306.1	SAMN04488529_101270	SAMN04488529_104148	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.998
SDO73830.1	SDP43756.1	SAMN04488529_101270	SAMN04488529_105165	Diguanylate cyclase (GGDEF) domain-containing protein.	HD domain-containing protein.	0.786
SDO73830.1	SDP53598.1	SAMN04488529_101270	SAMN04488529_10750	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.997
SDO73830.1	SDP68530.1	SAMN04488529_101270	SAMN04488529_11233	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.999
SDO73830.1	SDP68599.1	SAMN04488529_101270	SAMN04488529_11237	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.999
SDO73830.1	SDP72769.1	SAMN04488529_101270	SAMN04488529_11411	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.972
SDO80571.1	SDO63620.1	SAMN04488529_101483	SAMN04488529_1017	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.853
SDO80571.1	SDO73830.1	SAMN04488529_101483	SAMN04488529_101270	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.972