Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDP54247.1 | SDP54320.1 | SAMN04488529_10786 | SAMN04488529_10790 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Chorismate mutase. | 0.997 |
SDP54247.1 | SDP54413.1 | SAMN04488529_10786 | SAMN04488529_10795 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Prephenate dehydrogenase. | 0.837 |
SDP54247.1 | aroA | SAMN04488529_10786 | SAMN04488529_10788 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.797 |
SDP54247.1 | aroB | SAMN04488529_10786 | SAMN04488529_10787 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.995 |
SDP54247.1 | aroC | SAMN04488529_10786 | SAMN04488529_10789 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.887 |
SDP54247.1 | aroE | SAMN04488529_10786 | SAMN04488529_10791 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.814 |
SDP54247.1 | aroK | SAMN04488529_10786 | SAMN04488529_10792 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.805 |
SDP54247.1 | aroQ | SAMN04488529_10786 | SAMN04488529_10793 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.400 |
SDP54320.1 | SDP54247.1 | SAMN04488529_10790 | SAMN04488529_10786 | Chorismate mutase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.997 |
SDP54320.1 | SDP54393.1 | SAMN04488529_10790 | SAMN04488529_10794 | Chorismate mutase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.997 |
SDP54320.1 | SDP54413.1 | SAMN04488529_10790 | SAMN04488529_10795 | Chorismate mutase. | Prephenate dehydrogenase. | 0.993 |
SDP54320.1 | aroA | SAMN04488529_10790 | SAMN04488529_10788 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.999 |
SDP54320.1 | aroB | SAMN04488529_10790 | SAMN04488529_10787 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.992 |
SDP54320.1 | aroC | SAMN04488529_10790 | SAMN04488529_10789 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.998 |
SDP54320.1 | aroE | SAMN04488529_10790 | SAMN04488529_10791 | Chorismate mutase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.996 |
SDP54320.1 | aroK | SAMN04488529_10790 | SAMN04488529_10792 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.996 |
SDP54320.1 | aroQ | SAMN04488529_10790 | SAMN04488529_10793 | Chorismate mutase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.936 |
SDP54320.1 | cmk | SAMN04488529_10790 | SAMN04488529_101774 | Chorismate mutase. | Cytidylate kinase. | 0.932 |
SDP54393.1 | SDP54320.1 | SAMN04488529_10794 | SAMN04488529_10790 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Chorismate mutase. | 0.997 |
SDP54393.1 | SDP54413.1 | SAMN04488529_10794 | SAMN04488529_10795 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Prephenate dehydrogenase. | 0.913 |
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