STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP61838.1PRD domain-containing protein. (119 aa)    
Predicted Functional Partners:
SDP61822.1
Helix-turn-helix domain-containing protein.
 
    0.951
SDP61854.1
Protein of unknown function DUF2620.
 
     0.931
SDP61874.1
Protein of unknown function.
 
     0.931
SDP61891.1
Phosphotriesterase-related protein.
 
     0.910
SDP61906.1
Predicted amino acid racemase.
 
     0.881
SDP61927.1
Phosphopentomutase.
 
     0.838
SDO80888.1
PTS system D-glucose-specific IIA component, Glc family /PTS system D-glucose-specific IIB component, Glc family /PTS system D-glucose-specific IIC component, Glc family.
  
 
 0.640
SDP34359.1
PTS system, D-glucosamine-specific IIC component.
  
 
 0.640
SDP83483.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.640
SDO70201.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.561
Your Current Organism:
Clostridium gasigenes
NCBI taxonomy Id: 94869
Other names: ATCC BAA-158, C. gasigenes, CIP 106517, Clostridium gasigenes Broda et al. 2000, DSM 12272, strain DB1A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.