STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP75332.1Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase. (417 aa)    
Predicted Functional Partners:
SDP75296.1
Diguanylate cyclase, GGDEF domain.
 
 
 0.964
SDP75277.1
Hypothetical protein.
 
 
 0.951
SDP75316.1
Hypothetical protein.
 
  
 0.943
SDP75350.1
Cellulose synthase subunit.
 
     0.929
SDP68599.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.903
SDO91876.1
Tetratricopeptide repeat-containing protein.
  
 0.849
SDP68530.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.847
SDP72925.1
Hypothetical protein.
  
 
 0.832
SDP84362.1
Hypothetical protein.
 
 
 0.794
SDO91837.1
Tetratricopeptide repeat-containing protein.
  
 
 0.751
Your Current Organism:
Clostridium gasigenes
NCBI taxonomy Id: 94869
Other names: ATCC BAA-158, C. gasigenes, CIP 106517, Clostridium gasigenes Broda et al. 2000, DSM 12272, strain DB1A
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