STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP81297.1Hypothetical protein. (489 aa)    
Predicted Functional Partners:
SDP81284.1
Signal transduction histidine kinase.
 
     0.946
SDP81255.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.865
SDP81308.1
TldD protein.
       0.814
SDP81326.1
PmbA protein.
       0.810
SDP47759.1
HDIG domain-containing protein.
  
     0.717
SDP49260.1
Helix-turn-helix domain-containing protein.
  
     0.661
SDO90199.1
Acetyltransferase (GNAT) family protein.
  
     0.657
SDP17825.1
ABC-2 type transport system permease protein.
  
     0.608
SDP70935.1
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.491
SDP81237.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
       0.482
Your Current Organism:
Clostridium gasigenes
NCBI taxonomy Id: 94869
Other names: ATCC BAA-158, C. gasigenes, CIP 106517, Clostridium gasigenes Broda et al. 2000, DSM 12272, strain DB1A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.