STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ37377.1Penicillin-binding protein. (1030 aa)    
Predicted Functional Partners:
SIQ39076.1
Penicillin-binding protein 2B.
 
 
 0.934
SIQ32088.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
   
 
 0.894
SIR63796.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
   
 
 0.894
SIQ31681.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
   
 
 0.890
SIR44246.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.886
SIR48338.1
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.853
SIR03502.1
Cell division initiation protein.
   
 
 0.849
SIQ70433.1
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.848
SIQ39055.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
 
 0.823
SIQ37198.1
Cell division protein FtsW; Belongs to the SEDS family.
  
 
 0.817
Your Current Organism:
Paenibacillus macquariensis
NCBI taxonomy Id: 948756
Other names: ATCC 23464, Bacillus macquariensis, Bacillus sp. NCIM2474, CCUG 37394, CIP 103269, DSM 2, LMG 13289, LMG 6935, LMG:13289, LMG:6935, NCIB 9934, NCIB:9934, NCTC 10419, NRRL B-14306, NRRL:B:14306, P. macquariensis
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