STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ85430.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (224 aa)    
Predicted Functional Partners:
SIQ85458.1
Signal transduction histidine kinase.
  0.969
SIR54449.1
Signal transduction histidine kinase.
  
0.956
SIR50986.1
HAMP domain-containing protein.
 
 0.895
SIQ96903.1
Signal transduction histidine kinase.
  0.892
SIQ49206.1
HAMP domain-containing protein.
  0.866
SIQ79819.1
Signal transduction histidine kinase.
  0.860
SIR52374.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.856
SIQ50681.1
Signal transduction histidine kinase.
  0.845
SIR59617.1
HAMP domain-containing protein.
 
  0.841
SIR50473.1
Signal transduction histidine kinase.
  
  0.837
Your Current Organism:
Paenibacillus macquariensis
NCBI taxonomy Id: 948756
Other names: ATCC 23464, Bacillus macquariensis, Bacillus sp. NCIM2474, CCUG 37394, CIP 103269, DSM 2, LMG 13289, LMG 6935, LMG:13289, LMG:6935, NCIB 9934, NCIB:9934, NCTC 10419, NRRL B-14306, NRRL:B:14306, P. macquariensis
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