STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR50619.1Transcriptional regulator, MarR family. (142 aa)    
Predicted Functional Partners:
SIR50608.1
Quinol monooxygenase YgiN.
 
    0.929
SIR50633.1
Hypothetical protein.
 
 
  0.924
SIQ91802.1
Nitroreductase.
 
 
  0.597
SIQ37528.1
PTS system, D-glucosamine-specific IIC component.
     
 0.576
SIQ55347.1
PTS system, trehalose-specific IIC component.
     
 0.576
SIR24609.1
PTS system, glucose-specific IIA component.
     
 0.576
SIR25961.1
Putative NAD(P)H nitroreductase.
 
 
  0.560
SIR50644.1
4-carboxymuconolactone decarboxylase.
 
     0.494
Your Current Organism:
Paenibacillus macquariensis
NCBI taxonomy Id: 948756
Other names: ATCC 23464, Bacillus macquariensis, Bacillus sp. NCIM2474, CCUG 37394, CIP 103269, DSM 2, LMG 13289, LMG 6935, LMG:13289, LMG:6935, NCIB 9934, NCIB:9934, NCTC 10419, NRRL B-14306, NRRL:B:14306, P. macquariensis
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