STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM56Uncharacterized protein. (756 aa)    
Predicted Functional Partners:
STING1
Transmembrane protein 173.
   
 0.817
TRIM32
Tripartite motif containing 32.
    
 0.597
ENSCCAP00000008083
Sm domain-containing protein.
    
   0.531
LSM2
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
   0.531
CNBP
CCHC-type zinc finger nucleic acid binding protein.
   
   0.488
PCBP1
Uncharacterized protein.
    
 0.462
ENSCCAP00000022814
Uncharacterized protein.
    
 0.462
MUL1
Mitochondrial E3 ubiquitin protein ligase 1.
      
 0.460
DDX41
DEAD-box helicase 41.
    
 0.447
SYNE4
Spectrin repeat containing nuclear envelope family member 4.
  
  
  0.422
Your Current Organism:
Cebus capucinus
NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.