STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM54Tripartite motif containing 54. (402 aa)    
Predicted Functional Partners:
TTN
Uncharacterized protein.
   
 
 0.678
RNF207
Ring finger protein 207.
      
 0.675
SPEGNB
SPEG neighbor.
   
 
 0.574
TRIM40
Tripartite motif containing 40.
      
 0.526
NRAP
Nebulin related anchoring protein.
   
 
 0.524
TRIM44
Tripartite motif containing 44.
    
 
 0.524
TCAP
Titin-cap.
   
 
 0.516
BBOX1
Gamma-butyrobetaine hydroxylase 1.
      
 0.512
CHODL
Chondrolectin.
     
 0.502
TRIM37
Tripartite motif containing 37.
    
 
 0.499
Your Current Organism:
Cebus capucinus
NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.