LOC108302513 protein (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108302513

Uncharacterized protein. (301 aa)

Predicted Functional Partners:

ELP4

0.970

ELP3

0.961

ELP2

0.961

ELP1

0.945

ELP6

0.944

ENSCCAP00000021276

0.944

PIPOX

0.824

NMB

0.786

CIAO2B

0.673

KLHL15

0.617

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIAO2B	ELP4	ENSCCAP00000038734	ENSCCAP00000013062	Cytosolic iron-sulfur assembly component 2B.	Elongator acetyltransferase complex subunit 4.	0.742
CIAO2B	LOC108302513	ENSCCAP00000038734	ENSCCAP00000001459	Cytosolic iron-sulfur assembly component 2B.	Uncharacterized protein.	0.673
ELP1	ELP2	ENSCCAP00000017074	ENSCCAP00000029702	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator acetyltransferase complex subunit 2.	0.991
ELP1	ELP3	ENSCCAP00000017074	ENSCCAP00000018274	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.995
ELP1	ELP4	ENSCCAP00000017074	ENSCCAP00000013062	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator acetyltransferase complex subunit 4.	0.994
ELP1	ELP6	ENSCCAP00000017074	ENSCCAP00000014946	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator acetyltransferase complex subunit 6.	0.953
ELP1	ENSCCAP00000021276	ENSCCAP00000017074	ENSCCAP00000021276	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.953
ELP1	LOC108302513	ENSCCAP00000017074	ENSCCAP00000001459	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.945
ELP1	NMB	ENSCCAP00000017074	ENSCCAP00000003542	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Neuromedin B.	0.956
ELP2	ELP1	ENSCCAP00000029702	ENSCCAP00000017074	Elongator acetyltransferase complex subunit 2.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.991
ELP2	ELP3	ENSCCAP00000029702	ENSCCAP00000018274	Elongator acetyltransferase complex subunit 2.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.994
ELP2	ELP4	ENSCCAP00000029702	ENSCCAP00000013062	Elongator acetyltransferase complex subunit 2.	Elongator acetyltransferase complex subunit 4.	0.992
ELP2	ELP6	ENSCCAP00000029702	ENSCCAP00000014946	Elongator acetyltransferase complex subunit 2.	Elongator acetyltransferase complex subunit 6.	0.960
ELP2	ENSCCAP00000021276	ENSCCAP00000029702	ENSCCAP00000021276	Elongator acetyltransferase complex subunit 2.	Uncharacterized protein.	0.960
ELP2	LOC108302513	ENSCCAP00000029702	ENSCCAP00000001459	Elongator acetyltransferase complex subunit 2.	Uncharacterized protein.	0.961
ELP3	ELP1	ENSCCAP00000018274	ENSCCAP00000017074	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.995
ELP3	ELP2	ENSCCAP00000018274	ENSCCAP00000029702	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator acetyltransferase complex subunit 2.	0.994
ELP3	ELP4	ENSCCAP00000018274	ENSCCAP00000013062	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator acetyltransferase complex subunit 4.	0.995
ELP3	ELP6	ENSCCAP00000018274	ENSCCAP00000014946	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator acetyltransferase complex subunit 6.	0.960
ELP3	ENSCCAP00000021276	ENSCCAP00000018274	ENSCCAP00000021276	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.960