PDC protein (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PDC

Phosducin. (246 aa)

Predicted Functional Partners:

GNGT1

0.956

GNB5

0.926

GNB3

0.925

GNG11

0.870

GNB1

0.821

GNB4

0.821

GNB2

0.807

GNAT3

0.688

RCVRN

0.686

ENSCCAP00000018594

0.666

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCCAP00000018594	GNB1	ENSCCAP00000018594	ENSCCAP00000009260	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 1.	0.503
ENSCCAP00000018594	GNB2	ENSCCAP00000018594	ENSCCAP00000024267	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 2.	0.503
ENSCCAP00000018594	GNB3	ENSCCAP00000018594	ENSCCAP00000033355	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 3.	0.503
ENSCCAP00000018594	GNB4	ENSCCAP00000018594	ENSCCAP00000016061	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 4.	0.503
ENSCCAP00000018594	GNB5	ENSCCAP00000018594	ENSCCAP00000033875	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 5.	0.587
ENSCCAP00000018594	PDC	ENSCCAP00000018594	ENSCCAP00000001530	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Phosducin.	0.666
GNAT3	GNB1	ENSCCAP00000022527	ENSCCAP00000009260	G protein subunit alpha transducin 3.	G protein subunit beta 1.	0.858
GNAT3	GNB2	ENSCCAP00000022527	ENSCCAP00000024267	G protein subunit alpha transducin 3.	G protein subunit beta 2.	0.788
GNAT3	GNB3	ENSCCAP00000022527	ENSCCAP00000033355	G protein subunit alpha transducin 3.	G protein subunit beta 3.	0.987
GNAT3	GNB4	ENSCCAP00000022527	ENSCCAP00000016061	G protein subunit alpha transducin 3.	G protein subunit beta 4.	0.858
GNAT3	GNB5	ENSCCAP00000022527	ENSCCAP00000033875	G protein subunit alpha transducin 3.	G protein subunit beta 5.	0.775
GNAT3	GNG11	ENSCCAP00000022527	ENSCCAP00000034011	G protein subunit alpha transducin 3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.792
GNAT3	GNGT1	ENSCCAP00000022527	ENSCCAP00000020003	G protein subunit alpha transducin 3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.795
GNAT3	PDC	ENSCCAP00000022527	ENSCCAP00000001530	G protein subunit alpha transducin 3.	Phosducin.	0.688
GNB1	ENSCCAP00000018594	ENSCCAP00000009260	ENSCCAP00000018594	G protein subunit beta 1.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.503
GNB1	GNAT3	ENSCCAP00000009260	ENSCCAP00000022527	G protein subunit beta 1.	G protein subunit alpha transducin 3.	0.858
GNB1	GNB3	ENSCCAP00000009260	ENSCCAP00000033355	G protein subunit beta 1.	G protein subunit beta 3.	0.602
GNB1	GNB5	ENSCCAP00000009260	ENSCCAP00000033875	G protein subunit beta 1.	G protein subunit beta 5.	0.452
GNB1	GNG11	ENSCCAP00000009260	ENSCCAP00000034011	G protein subunit beta 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.947
GNB1	GNGT1	ENSCCAP00000009260	ENSCCAP00000020003	G protein subunit beta 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.997