Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
PUF60Poly(U) binding splicing factor 60. (563 aa)    
Predicted Functional Partners:
FUBP1
Far upstream element binding protein 1.
   
 
 0.956
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.941
SF3B3
Splicing factor 3b subunit 3.
    
 0.940
SMNDC1
Survival motor neuron domain containing 1.
   
 0.940
SF3A2
Splicing factor 3a subunit 2.
   
 0.935
ENSCCAP00000037299
U1-type domain-containing protein.
   
 0.935
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.931
SF3B1
Splicing factor 3b subunit 1.
   
 0.925
SAP30BP
SAP30 binding protein.
   
   0.911
U2SURP
U2 snRNP associated SURP domain containing.
   
 0.898
Your Current Organism:
Cebus capucinus
NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin
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