STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUF60Poly(U) binding splicing factor 60. (563 aa)    
Predicted Functional Partners:
FUBP1
Far upstream element binding protein 1.
   
 
 0.956
U2SURP
U2 snRNP associated SURP domain containing.
   
 0.898
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.897
RBM17
RNA binding motif protein 17.
   
 
0.893
DHX15
DEAH-box helicase 15.
   
 0.889
KHSRP
KH-type splicing regulatory protein.
   
 
 0.889
DDX46
DEAD-box helicase 46.
    
 0.888
SF3A1
Splicing factor 3a subunit 1.
   
 0.878
SF3B3
Splicing factor 3b subunit 3.
    
 0.824
SF3A2
Splicing factor 3a subunit 2.
   
 0.819
Your Current Organism:
Cebus capucinus
NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.