Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSCCAP00000001719CCHC-type domain-containing protein. (199 aa)    
Predicted Functional Partners:
TUT4
Terminal uridylyl transferase 4.
    
 0.768
TUT7
Uncharacterized protein.
    
 0.745
EBNA1BP2
EBNA1 binding protein 2.
   
   0.731
UPF1
UPF1 RNA helicase and ATPase.
    
 0.700
SNRPB
Small nuclear ribonucleoprotein-associated protein.
   
  0.699
IGF2BP3
Insulin like growth factor 2 mRNA binding protein 3.
   
 0.699
POP1
POP1 homolog, ribonuclease P/MRP subunit.
    
   0.694
XRN2
XRN_M domain-containing protein.
    
 
 0.653
SNRPG
Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.
   
  0.630
LIN28B
Lin-28 homolog B.
   
   0.626
Your Current Organism:
Cebus capucinus
NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin
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