EPB41L3 protein (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EPB41L3

Erythrocyte membrane protein band 4.1 like 3. (1087 aa)

Predicted Functional Partners:

EPB41L2

0.969

EIF3A

0.874

EPB41L1

0.840

CADM1

0.835

MAPT

0.811

DDAH2

0.776

EPB41

0.761

SPTAN1

0.708

SPTBN1

0.693

COPS5

0.693

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CADM1	EPB41	ENSCCAP00000029209	ENSCCAP00000036275	Cell adhesion molecule 1.	Erythrocyte membrane protein band 4.1.	0.600
CADM1	EPB41L1	ENSCCAP00000029209	ENSCCAP00000034104	Cell adhesion molecule 1.	Erythrocyte membrane protein band 4.1 like 1.	0.485
CADM1	EPB41L2	ENSCCAP00000029209	ENSCCAP00000021142	Cell adhesion molecule 1.	Erythrocyte membrane protein band 4.1 like 2.	0.485
CADM1	EPB41L3	ENSCCAP00000029209	ENSCCAP00000001967	Cell adhesion molecule 1.	Erythrocyte membrane protein band 4.1 like 3.	0.835
COPS5	EIF3A	ENSCCAP00000020769	ENSCCAP00000027854	COP9 signalosome subunit 5.	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	0.810
COPS5	EPB41	ENSCCAP00000020769	ENSCCAP00000036275	COP9 signalosome subunit 5.	Erythrocyte membrane protein band 4.1.	0.693
COPS5	EPB41L1	ENSCCAP00000020769	ENSCCAP00000034104	COP9 signalosome subunit 5.	Erythrocyte membrane protein band 4.1 like 1.	0.693
COPS5	EPB41L2	ENSCCAP00000020769	ENSCCAP00000021142	COP9 signalosome subunit 5.	Erythrocyte membrane protein band 4.1 like 2.	0.878
COPS5	EPB41L3	ENSCCAP00000020769	ENSCCAP00000001967	COP9 signalosome subunit 5.	Erythrocyte membrane protein band 4.1 like 3.	0.693
DDAH2	EPB41	ENSCCAP00000030789	ENSCCAP00000036275	Dimethylarginine dimethylaminohydrolase 2.	Erythrocyte membrane protein band 4.1.	0.561
DDAH2	EPB41L1	ENSCCAP00000030789	ENSCCAP00000034104	Dimethylarginine dimethylaminohydrolase 2.	Erythrocyte membrane protein band 4.1 like 1.	0.803
DDAH2	EPB41L2	ENSCCAP00000030789	ENSCCAP00000021142	Dimethylarginine dimethylaminohydrolase 2.	Erythrocyte membrane protein band 4.1 like 2.	0.886
DDAH2	EPB41L3	ENSCCAP00000030789	ENSCCAP00000001967	Dimethylarginine dimethylaminohydrolase 2.	Erythrocyte membrane protein band 4.1 like 3.	0.776
EIF3A	COPS5	ENSCCAP00000027854	ENSCCAP00000020769	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	COP9 signalosome subunit 5.	0.810
EIF3A	EPB41	ENSCCAP00000027854	ENSCCAP00000036275	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Erythrocyte membrane protein band 4.1.	0.553
EIF3A	EPB41L1	ENSCCAP00000027854	ENSCCAP00000034104	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Erythrocyte membrane protein band 4.1 like 1.	0.553
EIF3A	EPB41L2	ENSCCAP00000027854	ENSCCAP00000021142	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Erythrocyte membrane protein band 4.1 like 2.	0.553
EIF3A	EPB41L3	ENSCCAP00000027854	ENSCCAP00000001967	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Erythrocyte membrane protein band 4.1 like 3.	0.874
EIF3A	MAPT	ENSCCAP00000027854	ENSCCAP00000033197	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Microtubule-associated protein.	0.624
EPB41	CADM1	ENSCCAP00000036275	ENSCCAP00000029209	Erythrocyte membrane protein band 4.1.	Cell adhesion molecule 1.	0.600