FAM110A protein (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FAM110A

Family with sequence similarity 110 member A. (295 aa)

Predicted Functional Partners:

TM2D2

0.564

ZMAT4

0.522

IRS4

0.484

KCTD3

0.446

LMAN1

0.443

FAM135B

0.442

ZDHHC18

0.442

TACC1

0.439

RPAP3

0.437

KCNK2

0.435

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAM110A	FAM135B	ENSCCAP00000001974	ENSCCAP00000017777	Family with sequence similarity 110 member A.	Family with sequence similarity 135 member B.	0.442
FAM110A	IRS4	ENSCCAP00000001974	ENSCCAP00000032005	Family with sequence similarity 110 member A.	Insulin receptor substrate 4.	0.484
FAM110A	KCNK2	ENSCCAP00000001974	ENSCCAP00000011034	Family with sequence similarity 110 member A.	Potassium two pore domain channel subfamily K member 2; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.435
FAM110A	KCTD3	ENSCCAP00000001974	ENSCCAP00000006737	Family with sequence similarity 110 member A.	Potassium channel tetramerization domain containing 3.	0.446
FAM110A	LMAN1	ENSCCAP00000001974	ENSCCAP00000008758	Family with sequence similarity 110 member A.	Lectin, mannose binding 1.	0.443
FAM110A	RPAP3	ENSCCAP00000001974	ENSCCAP00000014702	Family with sequence similarity 110 member A.	RNA polymerase II associated protein 3.	0.437
FAM110A	TACC1	ENSCCAP00000001974	ENSCCAP00000037691	Family with sequence similarity 110 member A.	Transforming acidic coiled-coil containing protein 1.	0.439
FAM110A	TM2D2	ENSCCAP00000001974	ENSCCAP00000024701	Family with sequence similarity 110 member A.	TM2 domain containing 2.	0.564
FAM110A	ZDHHC18	ENSCCAP00000001974	ENSCCAP00000038391	Family with sequence similarity 110 member A.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.442
FAM110A	ZMAT4	ENSCCAP00000001974	ENSCCAP00000019203	Family with sequence similarity 110 member A.	Zinc finger matrin-type 4.	0.522
FAM135B	FAM110A	ENSCCAP00000017777	ENSCCAP00000001974	Family with sequence similarity 135 member B.	Family with sequence similarity 110 member A.	0.442
IRS4	FAM110A	ENSCCAP00000032005	ENSCCAP00000001974	Insulin receptor substrate 4.	Family with sequence similarity 110 member A.	0.484
KCNK2	FAM110A	ENSCCAP00000011034	ENSCCAP00000001974	Potassium two pore domain channel subfamily K member 2; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Family with sequence similarity 110 member A.	0.435
KCTD3	FAM110A	ENSCCAP00000006737	ENSCCAP00000001974	Potassium channel tetramerization domain containing 3.	Family with sequence similarity 110 member A.	0.446
LMAN1	FAM110A	ENSCCAP00000008758	ENSCCAP00000001974	Lectin, mannose binding 1.	Family with sequence similarity 110 member A.	0.443
LMAN1	TM2D2	ENSCCAP00000008758	ENSCCAP00000024701	Lectin, mannose binding 1.	TM2 domain containing 2.	0.438
RPAP3	FAM110A	ENSCCAP00000014702	ENSCCAP00000001974	RNA polymerase II associated protein 3.	Family with sequence similarity 110 member A.	0.437
TACC1	FAM110A	ENSCCAP00000037691	ENSCCAP00000001974	Transforming acidic coiled-coil containing protein 1.	Family with sequence similarity 110 member A.	0.439
TM2D2	FAM110A	ENSCCAP00000024701	ENSCCAP00000001974	TM2 domain containing 2.	Family with sequence similarity 110 member A.	0.564
TM2D2	LMAN1	ENSCCAP00000024701	ENSCCAP00000008758	TM2 domain containing 2.	Lectin, mannose binding 1.	0.438