LOC108306343 protein (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108306343

Uncharacterized protein. (247 aa)

Predicted Functional Partners:

FAU

0.969

LOC108288201

0.969

RPL13

0.926

MRPL17

0.887

ENSCCAP00000033938

0.887

TUFM

0.884

MRPL12

0.883

MRPL33

0.881

MRPS16

0.881

MRPL9

0.879

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCCAP00000033938	LOC108306343	ENSCCAP00000033938	ENSCCAP00000003772	Uncharacterized protein.	Uncharacterized protein.	0.887
ENSCCAP00000033938	MRPL12	ENSCCAP00000033938	ENSCCAP00000018104	Uncharacterized protein.	Mitochondrial ribosomal protein L12.	0.998
ENSCCAP00000033938	MRPL17	ENSCCAP00000033938	ENSCCAP00000014491	Uncharacterized protein.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
ENSCCAP00000033938	MRPL33	ENSCCAP00000033938	ENSCCAP00000004677	Uncharacterized protein.	Mitochondrial ribosomal protein L33.	0.997
ENSCCAP00000033938	MRPL9	ENSCCAP00000033938	ENSCCAP00000007873	Uncharacterized protein.	Mitochondrial ribosomal protein L9.	0.994
ENSCCAP00000033938	MRPS16	ENSCCAP00000033938	ENSCCAP00000038412	Uncharacterized protein.	Mitochondrial ribosomal protein S16.	0.998
ENSCCAP00000033938	TUFM	ENSCCAP00000033938	ENSCCAP00000030495	Uncharacterized protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.998
FAU	LOC108288201	ENSCCAP00000027375	ENSCCAP00000039238	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.988
FAU	LOC108306343	ENSCCAP00000027375	ENSCCAP00000003772	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.969
FAU	RPL13	ENSCCAP00000027375	ENSCCAP00000012941	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
LOC108288201	FAU	ENSCCAP00000039238	ENSCCAP00000027375	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.988
LOC108288201	LOC108306343	ENSCCAP00000039238	ENSCCAP00000003772	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.969
LOC108288201	RPL13	ENSCCAP00000039238	ENSCCAP00000012941	Ubiquitin-like domain-containing protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
LOC108306343	ENSCCAP00000033938	ENSCCAP00000003772	ENSCCAP00000033938	Uncharacterized protein.	Uncharacterized protein.	0.887
LOC108306343	FAU	ENSCCAP00000003772	ENSCCAP00000027375	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.969
LOC108306343	LOC108288201	ENSCCAP00000003772	ENSCCAP00000039238	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.969
LOC108306343	MRPL12	ENSCCAP00000003772	ENSCCAP00000018104	Uncharacterized protein.	Mitochondrial ribosomal protein L12.	0.883
LOC108306343	MRPL17	ENSCCAP00000003772	ENSCCAP00000014491	Uncharacterized protein.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.887
LOC108306343	MRPL33	ENSCCAP00000003772	ENSCCAP00000004677	Uncharacterized protein.	Mitochondrial ribosomal protein L33.	0.881
LOC108306343	MRPL9	ENSCCAP00000003772	ENSCCAP00000007873	Uncharacterized protein.	Mitochondrial ribosomal protein L9.	0.879