STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS41VPS41 subunit of HOPS complex. (685 aa)    
Predicted Functional Partners:
VPS11
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
   
 0.997
VPS39
VPS39 subunit of HOPS complex.
   
 0.995
VPS16
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
   
 0.992
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.991
VPS33A
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.987
STX17
Syntaxin 17; Belongs to the syntaxin family.
    
 0.983
TGFBRAP1
Transforming growth factor beta receptor associated protein 1.
   
 0.974
VPS8
VPS8 subunit of CORVET complex.
   
 0.972
VPS33B
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.954
RAB7A
RAB7A, member RAS oncogene family.
    
 0.945
Your Current Organism:
Cebus capucinus
NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.