ENSCCAP00000006830 protein (Cebus capucinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCCAP00000006830

Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (170 aa)

Predicted Functional Partners:

FAU

0.999

LOC108288201

0.999

RPL13

0.989

LOC108297999

0.987

RPS21

0.987

RPS9

0.986

ENSCCAP00000032906

0.986

LOC108294668

0.982

LOC108302211

0.979

RPL35

0.979

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCCAP00000006830	ENSCCAP00000032906	ENSCCAP00000006830	ENSCCAP00000032906	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal_S4 domain-containing protein.	0.986
ENSCCAP00000006830	FAU	ENSCCAP00000006830	ENSCCAP00000027375	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
ENSCCAP00000006830	LOC108288201	ENSCCAP00000006830	ENSCCAP00000039238	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ubiquitin-like domain-containing protein.	0.999
ENSCCAP00000006830	LOC108294668	ENSCCAP00000006830	ENSCCAP00000027312	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.982
ENSCCAP00000006830	LOC108297999	ENSCCAP00000006830	ENSCCAP00000009415	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.987
ENSCCAP00000006830	LOC108302211	ENSCCAP00000006830	ENSCCAP00000000590	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.979
ENSCCAP00000006830	RPL13	ENSCCAP00000006830	ENSCCAP00000012941	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.989
ENSCCAP00000006830	RPL35	ENSCCAP00000006830	ENSCCAP00000018115	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.979
ENSCCAP00000006830	RPS21	ENSCCAP00000006830	ENSCCAP00000037700	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S21.	0.987
ENSCCAP00000006830	RPS9	ENSCCAP00000006830	ENSCCAP00000001200	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	S4 RNA-binding domain-containing protein.	0.986
ENSCCAP00000032906	ENSCCAP00000006830	ENSCCAP00000032906	ENSCCAP00000006830	Ribosomal_S4 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.986
ENSCCAP00000032906	FAU	ENSCCAP00000032906	ENSCCAP00000027375	Ribosomal_S4 domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
ENSCCAP00000032906	LOC108288201	ENSCCAP00000032906	ENSCCAP00000039238	Ribosomal_S4 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
ENSCCAP00000032906	LOC108294668	ENSCCAP00000032906	ENSCCAP00000027312	Ribosomal_S4 domain-containing protein.	Uncharacterized protein.	0.980
ENSCCAP00000032906	LOC108297999	ENSCCAP00000032906	ENSCCAP00000009415	Ribosomal_S4 domain-containing protein.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.981
ENSCCAP00000032906	LOC108302211	ENSCCAP00000032906	ENSCCAP00000000590	Ribosomal_S4 domain-containing protein.	Uncharacterized protein.	0.970
ENSCCAP00000032906	RPL13	ENSCCAP00000032906	ENSCCAP00000012941	Ribosomal_S4 domain-containing protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.983
ENSCCAP00000032906	RPL35	ENSCCAP00000032906	ENSCCAP00000018115	Ribosomal_S4 domain-containing protein.	Uncharacterized protein.	0.970
ENSCCAP00000032906	RPS21	ENSCCAP00000032906	ENSCCAP00000037700	Ribosomal_S4 domain-containing protein.	Ribosomal protein S21.	0.981
FAU	ENSCCAP00000006830	ENSCCAP00000027375	ENSCCAP00000006830	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999