STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108298419Nop domain-containing protein. (457 aa)    
Predicted Functional Partners:
PRPF4
Pre-mRNA processing factor 4.
   
 0.984
PRPF6
Pre-mRNA processing factor 6.
   
 0.979
PRPF3
Pre-mRNA processing factor 3.
   
 0.978
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.975
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.959
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 0.952
WBP4
WW domain binding protein 4.
    
 0.949
SF3B1
Splicing factor 3b subunit 1.
    
 0.946
SF3A1
Splicing factor 3a subunit 1.
   
 0.946
USP39
Ubiquitin specific peptidase 39.
   
 0.940
Your Current Organism:
Cebus capucinus
NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.