DMGDH protein (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DMGDH

Dimethylglycine dehydrogenase. (866 aa)

Predicted Functional Partners:

PIPOX

0.978

BHMT

0.977

GART

0.971

GNMT

0.963

GLDC

0.957

SARDH

0.955

ENSCCAP00000026314

0.927

GCSH

0.927

ENSCCAP00000036197

0.927

BHMT2

0.835

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BHMT	BHMT2	ENSCCAP00000000299	ENSCCAP00000015102	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	0.882
BHMT	DMGDH	ENSCCAP00000000299	ENSCCAP00000023561	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Dimethylglycine dehydrogenase.	0.977
BHMT	ENSCCAP00000026314	ENSCCAP00000000299	ENSCCAP00000026314	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.573
BHMT	ENSCCAP00000036197	ENSCCAP00000000299	ENSCCAP00000036197	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Lipoyl-binding domain-containing protein.	0.573
BHMT	GART	ENSCCAP00000000299	ENSCCAP00000009492	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.953
BHMT	GCSH	ENSCCAP00000000299	ENSCCAP00000027169	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.573
BHMT	GLDC	ENSCCAP00000000299	ENSCCAP00000022498	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.807
BHMT	GNMT	ENSCCAP00000000299	ENSCCAP00000034408	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Glycine N-methyltransferase.	0.475
BHMT	PIPOX	ENSCCAP00000000299	ENSCCAP00000000434	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Pipecolic acid and sarcosine oxidase.	0.556
BHMT	SARDH	ENSCCAP00000000299	ENSCCAP00000019966	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	Sarcosine dehydrogenase.	0.641
BHMT2	BHMT	ENSCCAP00000015102	ENSCCAP00000000299	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Betaine--homocysteine S-methyltransferase; Involved in the regulation of homocysteine metabolism.	0.882
BHMT2	DMGDH	ENSCCAP00000015102	ENSCCAP00000023561	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Dimethylglycine dehydrogenase.	0.835
BHMT2	ENSCCAP00000026314	ENSCCAP00000015102	ENSCCAP00000026314	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.573
BHMT2	ENSCCAP00000036197	ENSCCAP00000015102	ENSCCAP00000036197	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Lipoyl-binding domain-containing protein.	0.573
BHMT2	GART	ENSCCAP00000015102	ENSCCAP00000009492	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.953
BHMT2	GCSH	ENSCCAP00000015102	ENSCCAP00000027169	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.573
BHMT2	GLDC	ENSCCAP00000015102	ENSCCAP00000022498	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.807
BHMT2	GNMT	ENSCCAP00000015102	ENSCCAP00000034408	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Glycine N-methyltransferase.	0.475
BHMT2	PIPOX	ENSCCAP00000015102	ENSCCAP00000000434	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Pipecolic acid and sarcosine oxidase.	0.556
BHMT2	SARDH	ENSCCAP00000015102	ENSCCAP00000019966	Betaine--homocysteine S-methyltransferase 2; Involved in the regulation of homocysteine metabolism.	Sarcosine dehydrogenase.	0.641