STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS30970.1AraC-type DNA-binding protein. (285 aa)    
Predicted Functional Partners:
SFS33070.1
Glutamate synthase (NADH) large subunit.
    
  0.717
SFT05429.1
Glutamate synthase (NADH) large subunit.
    
  0.717
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.678
SFT05598.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.626
SFS97410.1
3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
  0.607
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.607
SFT05525.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.559
SFS30978.1
4-hydroxy-3-polyprenylbenzoate decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase.
       0.541
SFS80123.1
NAD-dependent deacetylase.
  
  
 0.498
SFS30987.1
UbiD family decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives.
       0.490
Your Current Organism:
Saccharopolyspora flava
NCBI taxonomy Id: 95161
Other names: DSM 44771, IFO 16345, JCM 10665, NBRC 16345, S. flava, Saccharopolyspora flava Lu et al. 2001, strain 07
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