STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS52873.1Very-short-patch-repair endonuclease. (291 aa)    
Predicted Functional Partners:
SFS54792.1
Cystathionine beta-synthase.
    
  0.612
SFS33070.1
Glutamate synthase (NADH) large subunit.
   
    0.546
SFT05429.1
Glutamate synthase (NADH) large subunit.
   
    0.546
SFS52883.1
Iron complex transport system ATP-binding protein.
       0.480
SFS52897.1
Iron complex transport system substrate-binding protein.
       0.451
SFS52907.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.451
SFS52861.1
Protein N-acetyltransferase, RimJ/RimL family.
       0.400
Your Current Organism:
Saccharopolyspora flava
NCBI taxonomy Id: 95161
Other names: DSM 44771, IFO 16345, JCM 10665, NBRC 16345, S. flava, Saccharopolyspora flava Lu et al. 2001, strain 07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.