Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFS45539.1 | SFS54653.1 | SAMN05660874_01259 | SAMN05660874_01704 | Cytochrome c biogenesis protein. | PhoH-like ATPase. | 0.409 |
SFS45539.1 | SFS92813.1 | SAMN05660874_01259 | SAMN05660874_04257 | Cytochrome c biogenesis protein. | Protein of unknown function. | 0.433 |
SFS45539.1 | SFS92857.1 | SAMN05660874_01259 | SAMN05660874_04260 | Cytochrome c biogenesis protein. | DNA-binding transcriptional regulator, PucR family. | 0.457 |
SFS54653.1 | SFS45539.1 | SAMN05660874_01704 | SAMN05660874_01259 | PhoH-like ATPase. | Cytochrome c biogenesis protein. | 0.409 |
SFS54653.1 | SFS56681.1 | SAMN05660874_01704 | SAMN05660874_01975 | PhoH-like ATPase. | Protein of unknown function. | 0.446 |
SFS54653.1 | SFS87612.1 | SAMN05660874_01704 | SAMN05660874_03939 | PhoH-like ATPase. | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.486 |
SFS54653.1 | SFS92813.1 | SAMN05660874_01704 | SAMN05660874_04257 | PhoH-like ATPase. | Protein of unknown function. | 0.463 |
SFS54653.1 | SFS92857.1 | SAMN05660874_01704 | SAMN05660874_04260 | PhoH-like ATPase. | DNA-binding transcriptional regulator, PucR family. | 0.423 |
SFS54653.1 | SFS93980.1 | SAMN05660874_01704 | SAMN05660874_04392 | PhoH-like ATPase. | Ribonuclease E. | 0.616 |
SFS54653.1 | rbpA-2 | SAMN05660874_01704 | SAMN05660874_05484 | PhoH-like ATPase. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.459 |
SFS56681.1 | SFS54653.1 | SAMN05660874_01975 | SAMN05660874_01704 | Protein of unknown function. | PhoH-like ATPase. | 0.446 |
SFS56681.1 | SFS92857.1 | SAMN05660874_01975 | SAMN05660874_04260 | Protein of unknown function. | DNA-binding transcriptional regulator, PucR family. | 0.489 |
SFS87612.1 | SFS54653.1 | SAMN05660874_03939 | SAMN05660874_01704 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | PhoH-like ATPase. | 0.486 |
SFS92813.1 | SFS45539.1 | SAMN05660874_04257 | SAMN05660874_01259 | Protein of unknown function. | Cytochrome c biogenesis protein. | 0.433 |
SFS92813.1 | SFS54653.1 | SAMN05660874_04257 | SAMN05660874_01704 | Protein of unknown function. | PhoH-like ATPase. | 0.463 |
SFS92813.1 | SFS92857.1 | SAMN05660874_04257 | SAMN05660874_04260 | Protein of unknown function. | DNA-binding transcriptional regulator, PucR family. | 0.407 |
SFS92813.1 | rbpA-2 | SAMN05660874_04257 | SAMN05660874_05484 | Protein of unknown function. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.472 |
SFS92857.1 | SFS45539.1 | SAMN05660874_04260 | SAMN05660874_01259 | DNA-binding transcriptional regulator, PucR family. | Cytochrome c biogenesis protein. | 0.457 |
SFS92857.1 | SFS54653.1 | SAMN05660874_04260 | SAMN05660874_01704 | DNA-binding transcriptional regulator, PucR family. | PhoH-like ATPase. | 0.423 |
SFS92857.1 | SFS56681.1 | SAMN05660874_04260 | SAMN05660874_01975 | DNA-binding transcriptional regulator, PucR family. | Protein of unknown function. | 0.489 |
page 1 of 2