STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS54840.1Acetamidase/formamidase. (449 aa)    
Predicted Functional Partners:
SFS67290.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.771
SFS33070.1
Glutamate synthase (NADH) large subunit.
     
 0.667
SFT05429.1
Glutamate synthase (NADH) large subunit.
     
 0.667
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
   
 
  0.651
SFS43396.1
Malate synthase; Belongs to the malate synthase family.
     
 0.613
SFS67243.1
Allophanate hydrolase.
 
 
 0.604
SFS70516.1
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.
 
 
 0.604
SFS97178.1
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit; Belongs to the amidase family.
  
 
 0.604
SFS80378.1
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.
  
 
 0.544
SFS81215.1
Amidase; Belongs to the amidase family.
  
 
 0.544
Your Current Organism:
Saccharopolyspora flava
NCBI taxonomy Id: 95161
Other names: DSM 44771, IFO 16345, JCM 10665, NBRC 16345, S. flava, Saccharopolyspora flava Lu et al. 2001, strain 07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.