STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS73368.1Ribosomal protein S18 acetylase RimI. (182 aa)    
Predicted Functional Partners:
SFS71315.1
Predicted ester cyclase.
  
     0.763
SFS54284.1
DNA-binding beta-propeller fold protein YncE.
  
     0.715
SFS74284.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.711
SFS71370.1
Cupin domain protein.
  
     0.686
SFS65119.1
Ig-like domain (group 3).
  
     0.676
SFS87731.1
CGNR zinc finger domain-containing protein.
  
    0.668
SFS71592.1
Transcriptional regulator, LytTR family.
  
     0.662
SFS46542.1
Metallo-beta-lactamase superfamily protein.
  
    0.656
SFT05662.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.638
SFT02083.1
Lysophospholipase, alpha-beta hydrolase superfamily.
  
     0.636
Your Current Organism:
Saccharopolyspora flava
NCBI taxonomy Id: 95161
Other names: DSM 44771, IFO 16345, JCM 10665, NBRC 16345, S. flava, Saccharopolyspora flava Lu et al. 2001, strain 07
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