STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS78877.1Transcriptional regulator, LacI family. (338 aa)    
Predicted Functional Partners:
SFS33070.1
Glutamate synthase (NADH) large subunit.
    
 
 0.845
SFT05429.1
Glutamate synthase (NADH) large subunit.
    
 
 0.845
SFS78890.1
Beta-xylosidase.
 
  
  0.722
SFS70352.1
Phosphocarrier protein.
   
 
 0.679
SFT06419.1
Phosphocarrier protein.
   
 
 0.679
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.667
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.667
cysC-2
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
    
   0.667
SFT09094.1
Nonribosomal peptide synthetase DhbF.
    
 
 0.665
SFS97410.1
3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
   0.650
Your Current Organism:
Saccharopolyspora flava
NCBI taxonomy Id: 95161
Other names: DSM 44771, IFO 16345, JCM 10665, NBRC 16345, S. flava, Saccharopolyspora flava Lu et al. 2001, strain 07
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