STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS94362.12-methylcitrate dehydratase PrpD. (467 aa)    
Predicted Functional Partners:
SFS94354.1
Kynurenine formamidase.
 
     0.939
SFS94346.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
    0.873
SFS56090.1
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.871
SFS94339.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
 
  0.831
SFS94316.1
Allantoinase.
 
     0.821
SFS94331.1
Transcriptional regulator, IclR family.
 
     0.799
SFS56193.1
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.738
SFS94325.1
Fumarate reductase flavoprotein subunit.
 
     0.638
SFS79112.1
Citrate synthase.
  
 
 0.610
SFT08165.1
Hypothetical protein.
 
 
  0.610
Your Current Organism:
Saccharopolyspora flava
NCBI taxonomy Id: 95161
Other names: DSM 44771, IFO 16345, JCM 10665, NBRC 16345, S. flava, Saccharopolyspora flava Lu et al. 2001, strain 07
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.